densEstBayes - Density Estimation via Bayesian Inference Engines

Bayesian density estimates for univariate continuous random samples are provided using the Bayesian inference engine paradigm. The engine options are: Hamiltonian Monte Carlo, the no U-turn sampler, semiparametric mean field variational Bayes and slice sampling. The methodology is described in Wand and Yu (2020) <arXiv:2009.06182>.

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openblascpp

3.82 score 9 dependents 15 scripts 1.6k downloads

HRW - Datasets, Functions and Scripts for Semiparametric Regression Supporting Harezlak, Ruppert & Wand (2018)

The book "Semiparametric Regression with R" by J. Harezlak, D. Ruppert & M.P. Wand (2018, Springer; ISBN: 978-1-4939-8851-8) makes use of datasets and scripts to explain semiparametric regression concepts. Each of the book's scripts are contained in this package as well as datasets that are not within other R packages. Functions that aid semiparametric regression analysis are also included.

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3.06 score 3 dependents 129 scripts 592 downloads

glmmEP - Generalized Linear Mixed Model Analysis via Expectation Propagation

Approximate frequentist inference for generalized linear mixed model analysis with expectation propagation used to circumvent the need for multivariate integration. In this version, the random effects can be any reasonable dimension. However, only probit mixed models with one level of nesting are supported. The methodology is described in Hall, Johnstone, Ormerod, Wand and Yu (2018) <arXiv:1805.08423v1>.

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openblas

2.08 score 12 scripts 174 downloads

gamselBayes - Bayesian Generalized Additive Model Selection

Generalized additive model selection via approximate Bayesian inference is provided. Bayesian mixed model-based penalized splines with spike-and-slab-type coefficient prior distributions are used to facilitate fitting and selection. The approximate Bayesian inference engine options are: (1) Markov chain Monte Carlo and (2) mean field variational Bayes. Markov chain Monte Carlo has better Bayesian inferential accuracy, but requires a longer run-time. Mean field variational Bayes is faster, but less accurate. The methodology is described in He and Wand (2024) <doi:10.1007/s10182-023-00490-y>.

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openblascpp

2.00 score 10 scripts 229 downloads

curvHDR - Filtering of Flow Cytometry Samples

Filtering, also known as gating, of flow cytometry samples using the curvHDR method, which is described in Naumann, U., Luta, G. and Wand, M.P. (2010) <DOI:10.1186/1471-2105-11-44>.

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2.00 score 6 scripts 213 downloads

gammSlice - Generalized Additive Mixed Model Analysis via Slice Sampling

Uses a slice sampling-based Markov chain Monte Carlo to conduct Bayesian fitting and inference for generalized additive mixed models. Generalized linear mixed models and generalized additive models are also handled as special cases of generalized additive mixed models. The methodology and software is described in Pham, T.H. and Wand, M.P. (2018). Australian and New Zealand Journal of Statistics, 60, 279-330 <DOI:10.1111/ANZS.12241>.

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1.08 score 1 stars 12 scripts 180 downloads